CAFE:分析基因家族大小的变化,并为进化论推论提供统计基础

上传者: 42131728 | 上传时间: 2023-03-19 23:40:17 | 文件大小: 6.26MB | 文件类型: ZIP
咖啡店 软件基因˚F爱米莉Ë旋涡的Çomputational一nalysis CAFE的目的是通过解释系统进化史并为进化推论提供统计基础的方式来分析基因家族大小的变化。 该程序使用生与死过程来模拟用户指定的系统发育树中的基因得失。 在此模型下生成的家庭规模分布可为评估观察到的分类单元之间家庭规模差异的重要性提供基础。 到 CAFE v4.2.1是CAFE应用程序常规发行版中的最新版本。 该手册和各种教程可以在网站( )上查看。 本文档介绍了如何下载和使用CAFE v4.2.1。 用 CAFE v4.2.1的必要输入是: 一个数据文件,包含系统发育树中包含的分类单元的基因家族大小 Newick格式的系统发育树,包括分支长度 根据以上输入,CAFE v4.2.1将计算: 整个树上或树中用户指定的分支子集上的生死参数λ的最大似然值λ(或单独的生死参数(分别为λ和μ)) 系统发育树中

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